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Index
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Index
A
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B
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C
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D
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F
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G
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H
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L
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M
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P
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R
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S
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T
A
add_proteins() (mokapot.dataset.LinearPsmDataset method)
assign_confidence() (mokapot.dataset.LinearPsmDataset method)
B
brew() (in module mokapot)
C
columns (mokapot.dataset.LinearPsmDataset property)
D
data (mokapot.dataset.LinearPsmDataset property)
decision_function() (mokapot.model.Model method)
(mokapot.model.PercolatorModel method)
digest() (in module mokapot)
F
features (mokapot.dataset.LinearPsmDataset property)
fit() (mokapot.model.Model method)
(mokapot.model.PercolatorModel method)
G
group_confidence_estimates (mokapot.confidence.GroupedConfidence property)
GroupedConfidence (class in mokapot.confidence)
groups (mokapot.confidence.GroupedConfidence property)
(mokapot.dataset.LinearPsmDataset property)
H
has_proteins (mokapot.dataset.LinearPsmDataset property)
L
levels (mokapot.confidence.LinearConfidence property)
LinearConfidence (class in mokapot.confidence)
LinearPsmDataset (class in mokapot.dataset)
load_model() (in module mokapot)
(in module mokapot.model)
M
make_decoys() (in module mokapot)
metadata (mokapot.dataset.LinearPsmDataset property)
Model (class in mokapot.model)
module
mokapot.confidence
mokapot.dataset
mokapot.model
mokapot.proteins
mokapot.confidence
module
mokapot.dataset
module
mokapot.model
module
mokapot.proteins
module
P
peptides (mokapot.dataset.LinearPsmDataset property)
PercolatorModel (class in mokapot.model)
plot_qvalues() (in module mokapot)
(in module mokapot.confidence)
(mokapot.confidence.LinearConfidence method)
predict() (mokapot.model.Model method)
(mokapot.model.PercolatorModel method)
Proteins (class in mokapot.proteins)
R
read_fasta() (in module mokapot)
read_pepxml() (in module mokapot)
read_percolator() (in module mokapot)
read_pin() (in module mokapot)
rng (mokapot.dataset.LinearPsmDataset property)
(mokapot.model.Model property)
(mokapot.model.PercolatorModel property)
S
save() (mokapot.model.Model method)
(mokapot.model.PercolatorModel method)
save_model() (in module mokapot)
(in module mokapot.model)
spectra (mokapot.dataset.LinearPsmDataset property)
T
targets (mokapot.dataset.LinearPsmDataset property)
to_flashlfq() (in module mokapot)
(mokapot.confidence.LinearConfidence method)
to_txt() (in module mokapot)
(mokapot.confidence.GroupedConfidence method)
(mokapot.confidence.LinearConfidence method)
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